1. Boyle, A. P., Hong, E. L., Hariharan, M., Cheng, Y., Schaub, M. A., Kasowski, M., … & Snyder, M. (2012). Annotation of functional variation in personal genomes using RegulomeDB. Genome Research, 22(9), 1790–1797. https://doi.org/10.1101/gr.137323.112
  2. Claverie, J. M. (2001). Gene number: What if there are only 30,000 human genes? Science, 291(5507), 1255–1257. https://doi.org/10.1126/science.1058785
  3. Djebali, S., Davis, C. A., Merkel, A., Dobin, A., Lassmann, T., Mortazavi, A., … & Gingeras, T. R. (2012). Landscape of transcription in human cells. Nature, 489(7414), 101–108. https://doi.org/10.1038/nature11233
  4. ENCODE Project Consortium. (2004). The ENCODE (Encyclopedia of DNA Elements) Project. Science, 306(5696), 636–640. https://doi.org/10.1126/science.1105136
  5. ENCODE Project Consortium. (2007). Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447(7146), 799–816. https://doi.org/10.1038/nature05874
  6. Gerstein, M. B., Kundaje, A., Hariharan, M., Landt, S. G., Yan, K. K., Cheng, C., … & Snyder, M. (2012). Architecture of the human regulatory network derived from ENCODE data. Nature, 489(7414), 91–100. https://doi.org/10.1038/nature11245
  7. Kundaje, A., Meuleman, W., Ernst, J., Bilenky, M., Yen, A., Heravi-Moussavi, A., … & Kellis, M. (2015). Integrative analysis of 111 reference human epigenomes. Nature, 518(7539), 317–330. https://doi.org/10.1038/nature14248
  8. Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., … & Collins, F. S. (2001). Initial sequencing and analysis of the human genome. Nature, 409(6822), 860–921. https://doi.org/10.1038/35057062
  9. Landt, S. G., Marinov, G. K., Kundaje, A., Kheradpour, P., Pauli, F., Batzoglou, S., … & Snyder, M. (2012). ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Research, 22(9), 1813–1831. https://doi.org/10.1101/gr.136184.111
  10. Rosenbloom, K. R., Dreszer, T. R., Long, J. C., Malladi, V. S., Sloan, C. A., Raney, B. J., … & Kent, W. J. (2010). ENCODE whole-genome data in the UCSC Genome Browser. Nucleic Acids Research, 38(Database issue), D620–D625. https://doi.org/10.1093/nar/gkp961
  11. Schaub, M. A., Boyle, A. P., Kundaje, A., Batzoglou, S., & Snyder, M. (2012). Linking disease associations with regulatory information in the human genome. Genome Research, 22(9), 1748–1759. https://doi.org/10.1101/gr.136127.111